PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037026m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 172aa    MW: 19365.4 Da    PI: 8.4658
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037026mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1576.6e-1834118290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +++ Y+k+ GF v +++s+k    g   + tf C ++g++++++ k     +++++ +tgC+a+l   + +dgkw + +l+l+HnH+l 
  orange1.1g037026m  34 YFKGYSKRKGFPVLRRTSRKD-SYGILRNVTFACGRSGETRSKSVK---ILKPQPNAKTGCNARLGAGLGDDGKWTIRSLNLDHNHALL 118
                        799*************99998.7888************99998766...99************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1434118IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEKDIEIEEL EKIEEDDEPI IGMSFDSDTD LFIYFKGYSK RKGFPVLRRT SRKDSYGILR  60
NVTFACGRSG ETRSKSVKIL KPQPNAKTGC NARLGAGLGD DGKWTIRSLN LDHNHALLTP  120
TKSKQDKETE VVIKMLLELE VISYECSKIA AFLHHQPKVI IKAEVLVLIK Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024953948.13e-73protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2H5PNC01e-123A0A2H5PNC0_CITUN; Uncharacterized protein
STRINGXP_006477544.12e-70(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17343310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.19e-12FAR1-related sequence 4