PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037136m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 171aa    MW: 19268.1 Da    PI: 9.8687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037136mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-1092142655
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        + +E++RRd+++s  ++L +l+P+  +ka++   s  + L +A  YIk+L+
  orange1.1g037136m  92 KTIEKNRRDHMKSLCFKLSSLIPShHFKASKDMISQQDQLDLASCYIKQLR 142
                        689*********************999999999****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.1E-985143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-885143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.59786141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-792141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.52E-694143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVSGLLAVAC CLLPSAFGLL VLDDSAILLS ESADMNCKHR QSCWTPPGNG SPVKSKHQQQ  60
MYNSLSFWRE EVHREWRRMK KRSDQSSKPD RKTIEKNRRD HMKSLCFKLS SLIPSHHFKA  120
SKDMISQQDQ LDLASCYIKQ LRERPMAGEP AIMGGSRSNG CWSKEGKSAQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682RRMKKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.103971e-136fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493102.14e-43transcription factor bHLH162-like
STRINGXP_006493102.11e-42(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-10bHLH family protein