PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037220m
Common NameCISIN_1g037220mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 101aa    MW: 11757.4 Da    PI: 9.1405
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037220mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.98.5e-19598395
                NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
                       +G++F+P++e+++  yL  + + +++  ++ ik++ di+++eP dL   +k+++e++ wyfF++ ++ky +++r++r tk+g  k t kd +++
  orange1.1g037220m  5 MGYKFQPSNEQIL--YLMVEKRLNPHFSHHPIKDIvDICSLEPGDLAtaSKTESEDQVWYFFCEPHHKYMKSNRAHRRTKAGHGKITSKDSQIK 96
                       7***********9..776666666655547799988**********84337777888************************************9 PP

                NAM 94 sk 95
                       ++
  orange1.1g037220m 97 AR 98
                       85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.1823101IPR003441NAC domain
SuperFamilySSF1019418.76E-15498IPR003441NAC domain
PfamPF023651.0E-5592IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MENLMGYKFQ PSNEQILYLM VEKRLNPHFS HHPIKDIVDI CSLEPGDLAT ASKTESEDQV  60
WYFFCEPHHK YMKSNRAHRR TKAGHGKITS KDSQIKARNG L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465073.14e-60NAC domain-containing protein 4-like
RefseqXP_024040163.14e-60NAC domain-containing protein 4-like
TrEMBLA0A067DCB72e-71A0A067DCB7_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006465073.11e-59(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-17NAC transcription factor-like 9