PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037352m
Common NameCISIN_1g037352mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 190aa    MW: 22336.8 Da    PI: 10.1399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037352mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.8e-122373148
                       TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                       rg WT eEde+l+  + + G +   +W+ ++r  g+ R++k+c +rw+++l
  orange1.1g037352m 23 RGFWTGEEDERLKSFILLNGEEggwNWEDVPRGAGLLRCGKSCHDRWFNHL 73
                       799*****************99*************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS51294151877IPR017930Myb domain
SuperFamilySSF466892.13E-1722118IPR009057Homeodomain-like
SMARTSM007172.0E-62275IPR001005SANT/Myb domain
PfamPF002493.8E-92373IPR001005SANT/Myb domain
CDDcd001673.23E-42673No hitNo description
Gene3DG3DSA:1.10.10.602.7E-162680IPR009057Homeodomain-like
PROSITE profilePS500906.78374118IPR017877Myb-like domain
SMARTSM007176.6E-478125IPR001005SANT/Myb domain
PfamPF002491.2E-579120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-1381121IPR009057Homeodomain-like
CDDcd001678.42E-482121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
YSEHIMEKMC PSCVSKDHHM IRRGFWTGEE DERLKSFILL NGEEGGWNWE DVPRGAGLLR  60
CGKSCHDRWF NHLNPNIRRG DFTLEEDELI INLCRAGSKW TNIGLLLPGR THKDVMNYCK  120
TSYMRNKMSN RGVDLLLISD REGSHQQPHH LLLLLLLKRK TSFKKSLRPK FRRTNWMEKR  180
AGNWIFISR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A2e-16231412117MYB3
3zqc_D2e-16231412117MYB3
3zqc_G2e-16231412117MYB3
3zqc_J2e-16231412117MYB3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015380573.16e-93transcription factor MYB32-like
SwissprotQ9SZP12e-29MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A067G7A81e-137A0A067G7A8_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006425416.12e-93(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3327022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.18e-32myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]