PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g037771m

Common Name

CISIN_1g037771mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 145aa MW: 16045.1 Da PI: 5.993

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g037771m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	63.4	8.3e-20	4	67	9	72
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 ++h+kv+gRd RvR++ ++ arf +Lq+eLG++++++ti+WLl+ p+ + ++++a+ orange1.1g037771m 4 TDRHAKVDGRDCRVRVPELTLARFIQLQRELGHKSNGQTIQWLLNHVPPSHFPEPTVNNKTANP 67 79********************************************998876655554444422 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-16	3	94	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	15.751	3	57	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
RCNTDRHAKV DGRDCRVRVP ELTLARFIQL QRELGHKSNG QTIQWLLNHV PPSHFPEPTV 60 NNKTANPNPN PNPSNDNNNV SSLVSLVTAG SSLHVALPIT STVETETMPE ESLEVEMLND 120 TRKMPLMSLL MQSGGEEPRE LVFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015388779.1	1e-102	transcription factor TCP16
TrEMBL	A0A067F9S6	1e-100	A0A067F9S6_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006424521.1	8e-61	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33369	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	8e-17	TCP family protein

Link Out ? help Back to Top
Phytozome	orange1.1g037771m