PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037828m
Common NameCISIN_1g037828mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 190aa    MW: 21721.7 Da    PI: 9.9222
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037828mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.59.4e-1885174290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         Y  YAk  GF vrk++++    ng+++ r++vCs+eg++  +  + t+++r  r+ trtgC+a l++  ++ +g w  t l   HnH+l+
  orange1.1g037828m  85 LYFLYAKLKGFGVRKDAKRID-GNGKVKGRRWVCSREGFKPCKYLEnTNRKRAARPLTRTGCRAGLRILFDEkKGAWISTILTAYHNHNLT 174
                        6889***********998776.8999**************9987664788999***************998889**************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-1685174IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDDVNGSVLV FVKFDGDEHY IGRVYLELWT WYGLVANTLG RRALPNETST NPQSGIIQQE  60
ATYEMLENRF AVGSEFANED EAESLYFLYA KLKGFGVRKD AKRIDGNGKV KGRRWVCSRE  120
GFKPCKYLEN TNRKRAARPL TRTGCRAGLR ILFDEKKGAW ISTILTAYHN HNLTLPHHVH  180
YIRAHRKVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043032.11e-94protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067ETT41e-139A0A067ETT4_CITSI; Uncharacterized protein
TrEMBLV4S3211e-133V4S321_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006428533.11e-134(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3299122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-16FAR1-related sequence 5