PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037856m
Common NameCISIN_1g037856mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 257aa    MW: 29093.8 Da    PI: 7.0999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037856mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29e-061441831155
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  orange1.1g037856m 144 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 183
                        7999**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.036133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-8144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-5144187No hitNo description
SuperFamilySSF474599.68E-10144210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
TNVHRNDFLM DSKLSKDDNQ LRDGGFAISY QSLVNCQQGI QSITTSCDNV SPQSFLLSRM  60
RSLPQFDVDF ESQQNERTHA IEATDLLPQE GVCANLALNK AALKVSKKIN NKKKTKLNSF  120
CEEQWRHQVN DTTTRIQEHR VPVRRSQKLS DKITALQKLV SPYGKTDTAS VLQEASLYIK  180
LLQEQIQNLF QMLSGSYNSL QVQVQVLHSL EMGEEQLDLR SRGLCLVPIS FSQKVTQEDL  240
LESHSTSRNT MVDTEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024957130.10.0transcription factor bHLH133-like isoform X2
TrEMBLA0A067FK520.0A0A067FK52_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006486499.11e-163(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17246610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.17e-22bHLH family protein