PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037956m
Common NameCISIN_1g037956mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 245aa    MW: 28215.7 Da    PI: 8.2015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037956mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +l+ +++++G  +W+  +++ g+ R++k+c++rw +yl
  orange1.1g037956m 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61
                       799*****************99**********99************97 PP
2Myb_DNA-binding62.96.3e-2067110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg++T+eEde ++++++qlG++ W++Ia++++ gRt++++k++w++
  orange1.1g037956m  67 RGNFTQEEDETIIKLHEQLGNR-WSAIASRLP-GRTDNEIKNHWHS 110
                        89********************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.331961IPR017930Myb domain
SuperFamilySSF466896.44E-3111108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002493.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-241568IPR009057Homeodomain-like
CDDcd001678.67E-111661No hitNo description
PROSITE profilePS5129428.11962116IPR017930Myb domain
SMARTSM007171.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1767110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2769115IPR009057Homeodomain-like
CDDcd001677.29E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVKAGGSEKP SLRKGSWTPE EDRKLIAYIR RYGIWNWSEM PKYAGLLRCG KSCRLRWMNY  60
LRPDIRRGNF TQEEDETIIK LHEQLGNRWS AIASRLPGRT DNEIKNHWHS RLSKKRLTKN  120
NQQQVPSVTK SLQETQTAAI FEFDEANKQN QNPPEILIAD PIPIIPNNSR EPPKVLTGCT  180
SPSPQLSADN CSSSTSYVSA NYEEIYKIQS SKVSNYDHPS ENLDELHNFW EQPFTVDTLC  240
MTMAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-311011523127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951267.10.0transcription factor MYB14-like
SwissprotQ9SJX81e-54MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A067GJW70.0A0A067GJW7_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006467925.11e-170(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-57myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]