PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g037987m

Common Name

CISIN_1g037987mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 143aa MW: 16277.5 Da PI: 8.721

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g037987m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.5	3.8e-17	34	120	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++Y+++ GF v+k +skk+ +++++ +tf C ++gk+++++++ + +++ +tgC+ k+ +++gkw + +l+l+H H l+p orange1.1g037987m 34 EFYKAYGRQEGFPVKKLTSKKR-SDKTVKYATFACGRSGKADSRSTN---LLKLKPVVKTGCESKIGGCVNEEGKWILRTLNLQHDHGLSP 120 6*************998886.7788************9988...88999*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-14	34	120	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MENFENERAI EDVRLEKFEP TLGMLFDGYE EMFEFYKAYG RQEGFPVKKL TSKKRSDKTV 60 KYATFACGRS GKADSRSTNL LKLKPVVKTG CESKIGGCVN EEGKWILRTL NLQHDHGLSP 120 DKERYFPCNH RISASEQARC AL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015386695.1	2e-98	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067ENV2	1e-102	A0A067ENV2_CITSI; Uncharacterized protein
STRING	XP_006480513.1	1e-78	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17343	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	5e-12	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	orange1.1g037987m