PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038008m
Common NameCISIN_1g038008mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 90aa    MW: 9760.47 Da    PI: 9.3576
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038008mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like41.23.8e-134367125
            G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                       kprlrWt +LH+rFv+av+qLGG+ 
  orange1.1g038008m 43 KPRLRWTADLHDRFVDAVTQLGGPS 67
                       79*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-114067IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-84367IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSFNLYIVSN TLPIGGGAAK RLKEAQNHGG GIEPCVVMTS DPKPRLRWTA DLHDRFVDAV  60
TQLGGPSSLF SSPPLCMHII FKKCLYVKM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.178452e-65fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449967.15e-24protein PHR1-LIKE 3 isoform X2
RefseqXP_006449968.16e-24protein PHR1-LIKE 3 isoform X1
RefseqXP_006467240.17e-24protein PHR1-LIKE 3-like
SwissprotQ8LAJ76e-15PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A067DA611e-60A0A067DA61_CITSI; Uncharacterized protein
STRINGXP_006467240.12e-23(Citrus sinensis)
STRINGXP_006449968.12e-23(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2194955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.17e-14G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]