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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g038062m |
| Common Name | CISIN_1g038062mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
SRS |
| Protein Properties |
Length: 422aa MW: 43831 Da PI: 8.16 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g038062m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 209.9 | 6.5e-65 | 190 | 352 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkl 91
+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa++rrerq ++aaa++ +a +++ k++ + +++++s+t++
orange1.1g038062m 190 SATTCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHVKSTWVPASRRRERQLMAAAAATVGPGAAgssgSTSGIKKP---RLISSQTTSHTST 278
5679*********************************************999888777665555332333334444...4457777888999 PP
DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
s+++++++++t+s lP +++++avf+cvrv++v+d ge+e+aYq++v+igGhvfkG+LydqG+++
orange1.1g038062m 279 SNTTPPRSFDTTSshqdasfkesLPGQIRAPAVFKCVRVTAVEDnGEDEYAYQAVVKIGGHVFKGFLYDQGVDD 352
9999999999998999**************************9989*************************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 422 aa
Download sequence Send
to blast |
IRAAVPDDLS LGFNAGPASA PTPSAGPTSW PPSAAGQHSS SRGPINYGLS PEMGMFVVAP 60
ASSFNHHHHH LHHHLHNHES SINVNSSDPM AAQNAAAATA LGVGVIPLLA ADQDLLNNFN 120
SRNNNKVSQI QFWQQNQNSH HQYFKKPAAA SSSSTFLEHH NNFIPSGAVT VAAASGGGNN 180
NSNNIAGCSS ATTCQDCGNQ AKKDCSHRRC RTCCKSRGFE CSTHVKSTWV PASRRRERQL 240
MAAAAATVGP GAAGSSGSTS GIKKPRLISS QTTSHTSTSN TTPPRSFDTT SSHQDASFKE 300
SLPGQIRAPA VFKCVRVTAV EDNGEDEYAY QAVVKIGGHV FKGFLYDQGV DDHHHQTREG 360
FPNMAELHLG GGASSSGPGG SGNGGKNAAC SSSPNILDPS DVYAASAGGF LGGSTYGNPI 420
N*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 8e-65 | Lateral root primordium (LRP) protein-related |
