PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g038116m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 400aa MW: 46084.8 Da PI: 6.7944

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038116m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	113.6	2.6e-35	27	399	6	374
GRAS 6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + Aea++++++e a+ + r++e p gd +Rl + + L+++ + + l+ ++ s+ a+++ + + P +f+h+ orange1.1g038116m 27 KAYAEAMEAEKKEIAKVIARRINEKFCPIGDVRERLLYHSFQPLNKQAEN------NYLHQEA-----SKVFDEAFEAIYRMIPNGTFAHFR 107 5679*****************************************999......3333333.....44555688899********* PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.........egppslRiTgvgspesg....skeeleetgerLakfAeelgvp 175 aN aIlea++ + e +H++Dfd++ G+QWp+++ a a+++ +++ +l++T ++ +e s+ + eet++rL++ A + g++ orange1.1g038116m 108 ANMAILEALSYDaEVLHVVDFDMGDGVQWPSMITATAQQQslllqhgviSQQMKLKLTSIKWEEDYeresSQWRFEETKNRLHDCAYSHGLN 199 *******94555*****************9987888777666699****9776678889999************** PP GRAS 176 fefnvlvakrledl..eleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvksl...........sPkvvvvveqe..adh. 248 ++ + + +l+dl e+++++ ++ +E +a n+++ l ++ +++ + + ++L++ k+ + ++++ + e + orange1.1g038116m 200 LKVKEI---QLQDLvtEVKKMKKNSggkREWVAFNCMHGLPHMGRRRSKR--HVMQFLNMAKDYlaycansktskNRGIITFGDGEnwGKIr 286 *8...44444226777776668889**********9444443..4588888888642222222222144589999988765665 PP GRAS 249 nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 n + F f + +++y al++s+e ++p+ ++ri +E ++++ + ++ e+ + + ++++ ++ +++ ++ v +s++ ++ak orange1.1g038116m 287 NLSCFGSFFESFMDHYQALLESIEWNFPKGLaQARIAMECLFVAPFVDSLALLEEWK---EIKEFGDFQSGFGS--LQGVGFSNESLMEAKV 373 7777888778889************9879999999998888888888888887...56668888888776..5788889999999999 PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ + ++++vl W++ pLv v aWr orange1.1g038116m 374 MVKGEY---------ENEMVLEWRGSPLVRVYAWR 399 999888.........679**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.246	1	388	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.8E-33	27	399	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
VDVSATLVLP REEMKIDNEL SARHLAKAYA EAMEAEKKEI AKVIARRINE KFCPIGDVRE 60 RLLYHSFQPL NKQAENNYLH QEASKVFDEA FEAIYRMIPN GTFAHFRANM AILEALSYDA 120 EVLHVVDFDM GDGVQWPSMI TATAQQQSLL LQHGVISQQM KLKLTSIKWE EDYERESSQW 180 RFEETKNRLH DCAYSHGLNL KVKEIQLQDL VTEVKKMKKN SGGKREWVAF NCMHGLPHMG 240 RRRSKRHVMQ FLNMAKDYLA YCANSKTSKN RGIITFGDGE NWGKIRNLSC FGSFFESFMD 300 HYQALLESIE WNFPKGLAQA RIAMECLFVA PFVDSLALLE EWKEIKEFGD FQSGFGSLQG 360 VGFSNESLME AKVMVKGEYE NEMVLEWRGS PLVRVYAWR*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

VDVSATLVLP REEMKIDNEL SARHLAKAYA EAMEAEKKEI AKVIARRINE KFCPIGDVRE  60
RLLYHSFQPL NKQAENNYLH QEASKVFDEA FEAIYRMIPN GTFAHFRANM AILEALSYDA  120
EVLHVVDFDM GDGVQWPSMI TATAQQQSLL LQHGVISQQM KLKLTSIKWE EDYERESSQW  180
RFEETKNRLH DCAYSHGLNL KVKEIQLQDL VTEVKKMKKN SGGKREWVAF NCMHGLPHMG  240
RRRSKRHVMQ FLNMAKDYLA YCANSKTSKN RGIITFGDGE NWGKIRNLSC FGSFFESFMD  300
HYQALLESIE WNFPKGLAQA RIAMECLFVA PFVDSLALLE EWKEIKEFGD FQSGFGSLQG  360
VGFSNESLME AKVMVKGEYE NEMVLEWRGS PLVRVYAWR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006481416.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2H5MXM1	0.0	A0A2H5MXM1_CITUN; Uncharacterized protein
STRING	XP_006481416.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14344	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	4e-15	GRAS family protein

Link Out ? help Back to Top
Phytozome	orange1.1g038116m