PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g038176m

Common Name

CISIN_1g038176mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 134aa MW: 15250.4 Da PI: 8.3906

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038176m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	41	128	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAke GFs+r+++s+ k+++ i+++++vC keg++++ + +++r+ r gC akl+v k++ gk++v +++eHnH+l+ orange1.1g038176m 41 EFYNKYAKEGGFSIRINSSTICKESNDIIRKEYVCFKEGQARQCQVV--NRKRRCGIIRGGCSAKLVVVKSEFGKYMVCIFVEEHNHALS 128 6*************************************9998866..88888999*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-19	41	128	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MNAQNVVGQS NCEDSLYVPE VALDRKPHKR QEFDTLDDAY EFYNKYAKEG GFSIRINSST 60 ICKESNDIIR KEYVCFKEGQ ARQCQVVNRK RRCGIIRGGC SAKLVVVKSE FGKYMVCIFV 120 EEHNHALSSP QRC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY336943	1e-137	AY336943.1 Poncirus trifoliata NBS-LRR-type disease resistance protein-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015389364.1	2e-76	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067DML3	6e-94	A0A067DML3_CITSI; Uncharacterized protein
STRING	XP_006442061.1	3e-68	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24003	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-11	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g038176m