PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038268m
Common NameCISIN_1g038268mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 260aa    MW: 29767.8 Da    PI: 8.5693
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038268mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.1e-3283136255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWt++LH +Fv+ave+LGG+e+AtPk++l+lm+vkgL+++hvkSHLQ+YR+
  orange1.1g038268m  83 PRLRWTQDLHLAFVHAVERLGGQERATPKSVLQLMNVKGLSIAHVKSHLQMYRS 136
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-3079137IPR009057Homeodomain-like
PROSITE profilePS5129412.40579139IPR017930Myb domain
SuperFamilySSF466893.23E-1581137IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2383138IPR006447Myb domain, plants
PfamPF002494.4E-984135IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MENVTDTVEI SSDDNKSNES GTQAFQKCSS FDLNEEAAMD DAENDNITNV PYSGGTSIIS  60
TNTTMEGKEI ITMARQYVRS KMPRLRWTQD LHLAFVHAVE RLGGQERATP KSVLQLMNVK  120
GLSIAHVKSH LQMYRSKKLD ASGQVLSNRI MQEGHDILEM YRKFNQHGRF RMDNRNYMSS  180
PLLEQPCDFK PYSSRYHPWA PVGHCTRYNP IIFQNEKKCF PYETIGNQGK CRNNSLSISW  240
MVLASVIKFN IPSFRLPLCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1984138458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1984138458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1984138458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1984138458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1984138458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1984138458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1984138458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1984138458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950476.10.0uncharacterized protein LOC102628788
RefseqXP_024950477.10.0uncharacterized protein LOC102628788
TrEMBLA0A067FJL10.0A0A067FJL1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006469002.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-35G2-like family protein