PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038285m
Common NameCISIN_1g038285mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 179aa    MW: 19886.4 Da    PI: 8.8556
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038285mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-182272156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       + ykGVr+  ++g+Wv+e+r+p   +k+ r++lg+f ++++Aa+a++aa+++l+g+
  orange1.1g038285m 22 PVYKGVRR--RNGKWVCELREP---NKKSRIWLGTFASPDKAARAYDAAALALRGN 72
                       68****85..47*********8...347*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-132271IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-192380IPR016177DNA-binding domain
PROSITE profilePS5103219.9682379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-282380IPR001471AP2/ERF domain
SMARTSM003803.8E-282385IPR001471AP2/ERF domain
CDDcd000181.59E-132481No hitNo description
PRINTSPR003673.1E-72435IPR001471AP2/ERF domain
PRINTSPR003673.1E-76181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
QKSSTAQKRK AGRKKFQETR HPVYKGVRRR NGKWVCELRE PNKKSRIWLG TFASPDKAAR  60
AYDAAALALR GNSASLNFPE AAGALRRAKS DDVRDIQCAA MEAAEKLSSP SSSKPCMESN  120
SENVQDSRRE FVDEEEVFNM PGIIDGMAEA LILTPPAMKS GFKWDDLDET VEFTLWSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1421801273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430282.11e-129dehydration-responsive element-binding protein 1D
TrEMBLA0A067F4K01e-128A0A067F4K0_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006430282.11e-129(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-35C-repeat-binding factor 4