PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038354m
Common NameCISIN_1g038354mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GeBP
Protein Properties Length: 187aa    MW: 21557.8 Da    PI: 9.0171
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038354mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57376.15.9e-2417106597
             DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf..kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                        ++w+ee ei +L Gli+f +k+g +p ++ ++f++++++s+ +  +++ sql +K+++L+kKfk++ +k      + +s++h++  felskk
  orange1.1g038354m  17 QVWTEEQEICILNGLIKFSTKKGIDPLKHKKRFFSYIRGSLAVeeEFTLSQLNDKLKSLQKKFKNNLNK-----GKGISTPHENRLFELSKK 103
                        79*************************************98652279**********************.....556999************ PP

             DUF573  95 iWg 97 
                        iWg
  orange1.1g038354m 104 IWG 106
                        **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.7E-2217106IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
SEDQDGQKVD KRSVQPQVWT EEQEICILNG LIKFSTKKGI DPLKHKKRFF SYIRGSLAVE  60
EEFTLSQLND KLKSLQKKFK NNLNKGKGIS TPHENRLFEL SKKIWGDDIK SVPATTEANI  120
EKFGELGENK IEQVLEQLGE AKRIEFKKEW DELQILELKL SVKRAELVQF QSEIMLDAMM  180
KKFATN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423929.11e-130transcription factor STKL2
RefseqXP_015386435.11e-130transcription factor STKL2-like
TrEMBLA0A067DV361e-130A0A067DV36_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5Q9N01e-130A0A2H5Q9N0_CITUN; Uncharacterized protein
STRINGXP_006423929.11e-130(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2282434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.19e-08DNA-binding storekeeper protein-related transcriptional regulator