PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g038544m

Common Name

CISIN_1g038544mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 70aa MW: 8146.55 Da PI: 11.9546

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038544m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.3	1.3e-26	18	67	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtpeLH++F +ave+LGG+ kA Pk+il++m+vkgL l+h+kSHLQ orange1.1g038544m 18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-24	15	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-20	18	68	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.09E-12	18	67	IPR009057	Homeodomain-like
Pfam	PF00249	6.3E-9	19	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MRNSQRTGVR QYNKSELPRL RWTPELHKHF SQAVERLGGK YKASPKRILH MMNVKGLKLS 60 HIKSHLQVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-15	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-15	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-15	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-15	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-15	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-15	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-15	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-15	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-15	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437113.2	2e-42	uncharacterized protein LOC18045532
Refseq	XP_006485154.1	2e-42	uncharacterized protein LOC102621802
Swissprot	Q700D9	2e-22	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A067DDH7	3e-43	A0A067DDH7_CITSI; Uncharacterized protein
STRING	XP_006485154.1	7e-42	(Citrus sinensis)
STRING	XP_006437113.1	4e-42	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	7e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g038544m