PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g038565m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 164aa MW: 17800.3 Da PI: 6.9893

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038565m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.7	3.8e-38	6	99	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+Ck+lrr+CakdCv+apyfp+++p+kfa+vhk+FGasn +lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ orange1.1g038565m 6 PCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQM 91 7************************************97......8999************************************* PP DUF260 93 elallkee 100 +la++++e orange1.1g038565m 92 QLAVAQAE 99 **9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.846	5	100	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-37	6	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGGSSPCASC KLLRRRCAKD CVFAPYFPSD DPQKFAMVHK VFGASNELPV HQRADAVSSL 60 VYEANARVRD PVYGCVGAIS YLQNQVSQLQ MQLAVAQAEI LCIQMQQDPP AVSLPTQIDH 120 HQDHDRSLLL SCSNINPQLL AAGFASSSSN AIQDPLKKES LWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	2	116	7	130	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	2	116	7	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006425146.1	1e-115	LOB domain-containing protein 12
Swissprot	Q8LBW3	4e-71	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	V4SMT0	1e-114	V4SMT0_9ROSI; Uncharacterized protein
STRING	XP_006425146.1	1e-115	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-73	LBD family protein

Link Out ? help Back to Top
Phytozome	orange1.1g038565m

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]