PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038703m
Common NameCISIN_1g038703mg, LOC102627678
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 200aa    MW: 22921.2 Da    PI: 10.0795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038703mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.57.8e-38181451128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        lp G+rF+P+ +e++v+yL+kk+ +++l+  ++ik++d+y + +P++Lp  ++k+ + +e yfF++ +++  +  +++r+tksgyWk tgk 
  orange1.1g038703m  18 LPLGYRFSPNGQEIIVQYLTKKILNQRLPS-NIIKDIDLYAYdHPRQLPiGEFKNcKPDEGYFFTQLENRDGK-GQPKRTTKSGYWKDTGKV 107
                        699**************************9.89******98879*****656665355588******999876.58999************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++  +++ vg kk+Lvfy+g+ p+g++++Wvmhe+r+
  orange1.1g038703m 108 EQIIW-NNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRV 145
                        ****9.8999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-3914174IPR003441NAC domain
PROSITE profilePS5100538.33918174IPR003441NAC domain
PfamPF023655.0E-2119145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MASQGVFGSI NQEEEFDLPL GYRFSPNGQE IIVQYLTKKI LNQRLPSNII KDIDLYAYDH  60
PRQLPIGEFK NCKPDEGYFF TQLENRDGKG QPKRTTKSGY WKDTGKVEQI IWNNSIVGFK  120
KILVFYEGKP PTGTRSRWVM HEFRVNPSYL SAFALDITTQ TEVVNYVACK IHHKKESGNK  180
RSEAGKKKNL PVRKKTKAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-29111808174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484176.11e-148NAC domain-containing protein 83 isoform X1
TrEMBLA0A067GSZ91e-147A0A067GSZ9_CITSI; Uncharacterized protein
STRINGXP_006484176.11e-148(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17601710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.15e-33NAC domain containing protein 80