PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038709m
Common NameCISIN_1g038709mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 68aa    MW: 7992.2 Da    PI: 10.5818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038709mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-142060145
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45
                       s+y GVr+++ +gr++AeIr p++   + r++lg+f+ aeeAa a
  orange1.1g038709m 20 SRYLGVRRRP-WGRYAAEIRNPRT---KERHWLGTFDAAEEAAIA 60
                       7899******.**********954...4***************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-142063IPR016177DNA-binding domain
CDDcd000188.32E-172060No hitNo description
PfamPF008472.4E-82060IPR001471AP2/ERF domain
SMARTSM003804.1E-92164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-192160IPR001471AP2/ERF domain
PROSITE profilePS5103216.2652167IPR001471AP2/ERF domain
PRINTSPR003671.3E-82233IPR001471AP2/ERF domain
PRINTSPR003671.3E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MEKFPELLYG NPKRSSRQSS RYLGVRRRPW GRYAAEIRNP RTKERHWLGT FDAAEEAAIA  60
VYMMILY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446878.11e-32ethylene-responsive transcription factor LEP
SwissprotQ3E7036e-22ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A067DCP27e-42A0A067DCP2_CITSI; Uncharacterized protein
STRINGPOPTR_0019s11780.11e-31(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.13e-24ERF family protein