PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038778m
Common NameCISIN_1g038778mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 127aa    MW: 14806.1 Da    PI: 10.4145
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038778mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.32.2e-3051273124
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        +GfrF+P++e++  + L+kk  + +++  ++ik++ di+++ePwdL   +k+++e++ +yfF+k   ky++++r++r t++gyWk tg+  +
  orange1.1g038778m   5 MGFRFQPSNEQIF-CLLEKKRLNPHFSH-HTIKDIdDICSLEPWDLAgaSKTESEDRVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSK 94 
                        7**********99.88999999999888.77***999*********8533777788899********************************* PP

                NAM  92 vlskkgelvglkktLvf.ykgrapkgektdWvmh 124
                        +++ ++ l g+kk+L+f y+g a+k  k  Wvmh
  orange1.1g038778m  95 IKT-RNGLSGTKKILTFkYHGPASKKAKIGWVMH 127
                        **9.8889*********559999999*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.4353127IPR003441NAC domain
SuperFamilySSF1019416.02E-304127IPR003441NAC domain
PfamPF023651.5E-145127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MESLMGFRFQ PSNEQIFCLL EKKRLNPHFS HHTIKDIDDI CSLEPWDLAG ASKTESEDRV  60
CYFFCKPYYK YKKSTRAHRR TNAGYWKVTG RGSKIKTRNG LSGTKKILTF KYHGPASKKA  120
KIGWVMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-14612720138NO APICAL MERISTEM PROTEIN
1ut4_B3e-14612720138NO APICAL MERISTEM PROTEIN
1ut7_A3e-14612720138NO APICAL MERISTEM PROTEIN
1ut7_B3e-14612720138NO APICAL MERISTEM PROTEIN
3swm_A2e-14612723141NAC domain-containing protein 19
3swm_B2e-14612723141NAC domain-containing protein 19
3swm_C2e-14612723141NAC domain-containing protein 19
3swm_D2e-14612723141NAC domain-containing protein 19
3swp_A2e-14612723141NAC domain-containing protein 19
3swp_B2e-14612723141NAC domain-containing protein 19
3swp_C2e-14612723141NAC domain-containing protein 19
3swp_D2e-14612723141NAC domain-containing protein 19
4dul_A3e-14612720138NAC domain-containing protein 19
4dul_B3e-14612720138NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045631.12e-91uncharacterized protein LOC112100396
TrEMBLA0A067DGK84e-91A0A067DGK8_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006476702.11e-89(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-20NAC transcription factor-like 9