PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038824m
Common NameCISIN_1g038824mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 187aa    MW: 21406.7 Da    PI: 9.7372
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038824mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-143980346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       ++T++E+e ++++++  G++ W+ Ia+ ++ gRt++++k++w++
  orange1.1g038824m 39 SFTPQEEEMIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 80
                       79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-111744IPR009057Homeodomain-like
SuperFamilySSF466894.24E-221790IPR009057Homeodomain-like
PROSITE profilePS500904.171831IPR017877Myb-like domain
PROSITE profilePS5129423.0153286IPR017930Myb domain
SMARTSM007179.8E-143684IPR001005SANT/Myb domain
CDDcd001674.23E-113982No hitNo description
PfamPF002491.4E-133980IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-214583IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGRPPCCDKL NVKKGLRRCG KSCRLRWTNY LRPDLKHESF TPQEEEMIIR LHAAIGSRWS  60
IIAQQLPGRT DNDVKNYWNT KLRKKLTEMG IDPVTHKPFS QILADYGNIG GLPKSGTRIG  120
CLNRDMSKNA FMMQKPEQHE SPFQVFSNIS SHLMTMVSPN VEPIKDTLLN HYNDHSNSMD  180
LLAQLQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-20188640108B-MYB
1h8a_C1e-19188660128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
UniprotTISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818136e-34LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132566e-34LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439694.11e-134transcription factor MYB35
RefseqXP_006477532.21e-134transcription factor MYB35-like, partial
SwissprotQ9LSI72e-51MYB35_ARATH; Transcription factor MYB35
TrEMBLA0A067G3231e-139A0A067G323_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006477532.11e-133(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.19e-54MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]