PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g038850m

Common Name

CISIN_1g038850mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 78aa MW: 8921.33 Da PI: 9.1737

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038850m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	49.4	1e-15	6	76	10	80
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdia 80 e++t+ + e+P+ r+kki+k ded++++++ea ++s++ elf+ l+ +s a e+kr+t+k d+ orange1.1g038850m 6 EEQNTETTRPEFPVGRVKKIIKLDEDINKVTSEALFIVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMR 76 68999999**********************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.3E-19	8	76	IPR009072	Histone-fold
Pfam	PF00808	2.5E-18	16	78	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.86E-16	17	78	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MPQEAEEQNT ETTRPEFPVG RVKKIIKLDE DINKVTSEAL FIVSRSTELF LRFLAEKSAE 60 AAIEKKRKTI KLGDMRVA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006484092.1	9e-46	nuclear transcription factor Y subunit C-4
TrEMBL	A0A067DE78	1e-47	A0A067DE78_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006484092.1	4e-45	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12860	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-20	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	orange1.1g038850m