PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038853m
Common NameCISIN_1g038853mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family EIL
Protein Properties Length: 423aa    MW: 47354.7 Da    PI: 5.923
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038853mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN33811.9e-116129149353
                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS- CS
               EIN3  49 msraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselq 140
                        msraQD+iLkYM+k+mevc+ qGfvYgi+pe gk v+g+sdsLr+WWk++v+fd+n+p ai++y  + l  ++  +l  ++ s+ h l+elq
  orange1.1g038853m   1 MSRAQDSILKYMVKIMEVCKGQGFVYGIVPERGKAVTGSSDSLREWWKDNVRFDKNAPLAIAQY-MDPLSEQDTGDLIDNPGSQMHYLHELQ 91 
                        9***************************************************************.44455555555566899********** PP

                        HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSS CS
               EIN3 141 DTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqsk 232
                        DTtlgSLLsalmqhc ppqr+fple+g++pPWWPtG+e+wwge+g+sk++g+ppy+kphdl+kawkvsvL+avikhmsp++++ir+l+ qsk
  orange1.1g038853m  92 DTTLGSLLSALMQHCVPPQRKFPLERGLAPPWWPTGSEAWWGEQGTSKEHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLNKIRRLVKQSK 183
                        ******************************************************************************************** PP

                        SSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3 233 ylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqkedve..gkkeskikhvqavkttagfpvvrkrkkkpsesakvss 322
                        +lq+km+ake+ ++++v+n+ee++++        l+k+  k+  ++++ke+    + k ++  +v +++t    +v +krk    e+++v++
  orange1.1g038853m 184 CLQHKMTAKETQTWSKVVNKEESLLQ--------LTKKCLKISSNEDHKEEEApiVGKGKH-VNVPSCHT---SNVGEKRK-CVFEREIVND 262
                        **********************9873........444555555555555555555444444.34555555...89999998.7888888887 PP

                        X......XXXXXXX.XXXXXXXXXXXXXXXX CS
               EIN3 323 kevsrtcqssqfrgsetelifadknsisqne 353
                        +   + c++s++++se  ++f dkns+s++e
  orange1.1g038853m 263 T--QYACENSKCPQSELGFGFVDKNSRSDHE 291
                        7..69***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.0E-1081205No hitNo description
Gene3DG3DSA:1.10.3180.101.5E-6782210IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.58E-5984207IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSRAQDSILK YMVKIMEVCK GQGFVYGIVP ERGKAVTGSS DSLREWWKDN VRFDKNAPLA  60
IAQYMDPLSE QDTGDLIDNP GSQMHYLHEL QDTTLGSLLS ALMQHCVPPQ RKFPLERGLA  120
PPWWPTGSEA WWGEQGTSKE HGPPPYRKPH DLRKAWKVSV LAAVIKHMSP NLNKIRRLVK  180
QSKCLQHKMT AKETQTWSKV VNKEESLLQL TKKCLKISSN EDHKEEEAPI VGKGKHVNVP  240
SCHTSNVGEK RKCVFEREIV NDTQYACENS KCPQSELGFG FVDKNSRSDH ESHCTYTTDE  300
GESNDGNNEL GGQPGGSVDD ARITLTLADW INMELQKADR HLNEVAGGGS GSSAEDYESF  360
WDSGIDDLAM DGAFDSQRRH SLRPSLSSED HVAADQHCGA TSVWDLGYEN HKDYEDYEEH  420
KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-59822071126Protein ETHYLENE INSENSITIVE 3
4zds_B1e-59822071126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428161.20.0putative ETHYLENE INSENSITIVE 3-like 4 protein
RefseqXP_024951793.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-125EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A067ENE20.0A0A067ENE2_CITSI; Uncharacterized protein
STRINGXP_006464249.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-127EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]