PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038876m
Common NameCISIN_1g038876mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 127aa    MW: 14757.7 Da    PI: 9.3524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038876mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.22.3e-2181241109
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 
                        lp Gf+F+P+deel+ +yLkkk +g  ++l+e  i+++++y+ +P+++       + + ++++yfF++ +kk ++g+r  r++    g+W+ 
  orange1.1g038876m   8 LPHGFQFRPSDEELIEHYLKKKDSGIFIPLAEYfIRDCNLYQEKPSEIWDshggPFLNADEDLYFFTHLKKKFSKGSRIDRKVGssGGTWQG 99 
                        699************************9998888**************632455333478899******************75544899*** PP

                NAM  86 tgkdkevlsk.kgelvglkktLvfy 109
                            k+++s  ++ ++g kk + + 
  orange1.1g038876m 100 EDAGKDIVSGqSKIKIGSKKRFRYE 124
                        *******997455679****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-235125IPR003441NAC domain
PROSITE profilePS5100527.2128127IPR003441NAC domain
PfamPF023658.8E-149124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MQEHRPFLPH GFQFRPSDEE LIEHYLKKKD SGIFIPLAEY FIRDCNLYQE KPSEIWDSHG  60
GPFLNADEDL YFFTHLKKKF SKGSRIDRKV GSSGGTWQGE DAGKDIVSGQ SKIKIGSKKR  120
FRYEKQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437281.22e-86NAC domain-containing protein 83
TrEMBLA0A067D4584e-88A0A067D458_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006437282.13e-84(Citrus clementina)
STRINGXP_006437303.19e-84(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.18e-15NAC domain containing protein 45