PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g038974m

Common Name

CISIN_1g038974mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 135aa MW: 15492.7 Da PI: 7.5306

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038974m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	71.7	1.9e-22	2	120	1	124
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppG+ F+Pt+e+ v yL kv+g++ + i++++++++ePw+L + +++ ++++yf + r ++y++ + r + g+Wk+ g + orange1.1g038974m 2 LPPGVVFNPTEEDRV-SYLIGKVSGHTDGGGSYfIQDIQLCEHEPWELLSlAHDCCHQQMYFTHLR-SRYHS-EMVYREAVCGFWKNLGLSS 90 79***********.9*****96665555**********741333344555655555.55654.567777788****** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmh 124 + +k+g+ v +kk+L +y +k +kt+W+m orange1.1g038974m 91 YINDKGGKPVAVKKSLNYY----KKDVKTQWLMT 120 ***************....45679***6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.659	2	134	IPR003441	NAC domain
SuperFamily	SSF101941	8.24E-18	2	120	IPR003441	NAC domain
Pfam	PF02365	6.9E-11	3	120	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MLPPGVVFNP TEEDRVSYLI GKVSGHTDGG GSYFIQDIQL CEHEPWELLS LAHDCCHQQM 60 YFTHLRSRYH SEMVYREAVC GFWKNLGLSS YINDKGGKPV AVKKSLNYYK KDVKTQWLMT 120 CTHFCTITSI RHEN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A067D0I6	8e-98	A0A067D0I6_CITSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM29602	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	2e-13	NAC family protein

Link Out ? help Back to Top
Phytozome	orange1.1g038974m