PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039064m
Common NameCISIN_1g039064mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SRS
Protein Properties Length: 225aa    MW: 24873.7 Da    PI: 8.4693
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039064mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702157.86.9e-4971444154
             DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaa.saaeaaskrkrelkskkqsalsstklssa 94 
                        g ++CqdCGnqakk+Ca++RCRtCCk rg++C+th+kstW+pa++r +r ++++    ++++ + + +++kr r                ++
  orange1.1g039064m   7 GVTRCQDCGNQAKKNCAYMRCRTCCKRRGYECETHIKSTWIPAYRRHQRYHHQHLVPVHEQHlQLQGHSPKRLR----------------EN 82 
                        6689********************************************97766655333322022222222222................33 PP

             DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeee..laYqtavsigGhvfkGiLydqGlee 154
                         s+  l++ ++P+e+ sea frcv+vss+dd+ +   laY+t++s+gGh+fkGiLy+qG e+
  orange1.1g039064m  83 PSSPGLQIGNFPAEITSEATFRCVKVSSIDDAIDRttLAYKTSISVGGHIFKGILYYQGCES 144
                        3444788899*********************6554349*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.5E-509143IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.7E-261152IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.0E-2093141IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
QLGAELGVTR CQDCGNQAKK NCAYMRCRTC CKRRGYECET HIKSTWIPAY RRHQRYHHQH  60
LVPVHEQHLQ LQGHSPKRLR ENPSSPGLQI GNFPAEITSE ATFRCVKVSS IDDAIDRTTL  120
AYKTSISVGG HIFKGILYYQ GCESNSNNNV GESSSSEPPP PPQHQQQPYY PFTVAALTTT  180
TAATTTTTTA LAAADETPYS SSFTYPFGSY VSAGTQFFPK YPNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388465.11e-168protein SHI RELATED SEQUENCE 3
TrEMBLA0A2H5PKM11e-167A0A2H5PKM1_CITUN; Uncharacterized protein
STRINGXP_006423407.11e-165(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-45Lateral root primordium (LRP) protein-related