PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g039131m

Common Name

CISIN_1g039131mg, LOC102628040

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 386aa MW: 45331.6 Da PI: 6.9282

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g039131m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.6	1.2e-21	103	199	1	86
trihelix 1 rWtkqevlaLiearr........emeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 +Wt+++v++Li ++ +++ + +k ++W+ vsk+m erg+++sp+qC++k++nlnk ykk+++ +++ ++++ orange1.1g039131m 103 KWTEEMVKLLIYTVSyirqfalsNVG------NgrnepsflQKIGKWKVVSKVMVERGYRVSPQQCEDKFNNLNKTYKKLNDVLGRGmSCKV 188 7***********944444333333......133455677********************************************88999 PP trihelix 76 sstcpyfdqle 86 +++ + +d+++ orange1.1g039131m 189 VENPKILDEID 199 99999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-18	103	224	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEGQSSLTGG MIMEGLNSFQ DLQGAMQLHH QQDPNFYQPS CVVQVQPESV FPLRWQYMEE 60 QPLSYIDYNE DQRGKNLLMD CAIPGVDEHY AVEGIRTPWR RIKWTEEMVK LLIYTVSYIR 120 QFALSNVGNG RNEPSFLQKI GKWKVVSKVM VERGYRVSPQ QCEDKFNNLN KTYKKLNDVL 180 GRGMSCKVVE NPKILDEIDI PERKKDNAKK ILSSKQLFFE QMCSYHSGNQ LCLPHDPDLQ 240 RSLQLALSKK LDYDKQEQDP GAYTQDNETE DSNLKSMDYN GILEDHSQHA LTNLEGVHPE 300 GNTADGLWEQ WVAFRSCRLK LQRLQVNARI LRLENRWFKW QRICWRKDRE LIRMRLENER 360 LKIENERIAL ELKYKEMRAD YDLTV*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEGQSSLTGG MIMEGLNSFQ DLQGAMQLHH QQDPNFYQPS CVVQVQPESV FPLRWQYMEE  60
QPLSYIDYNE DQRGKNLLMD CAIPGVDEHY AVEGIRTPWR RIKWTEEMVK LLIYTVSYIR  120
QFALSNVGNG RNEPSFLQKI GKWKVVSKVM VERGYRVSPQ QCEDKFNNLN KTYKKLNDVL  180
GRGMSCKVVE NPKILDEIDI PERKKDNAKK ILSSKQLFFE QMCSYHSGNQ LCLPHDPDLQ  240
RSLQLALSKK LDYDKQEQDP GAYTQDNETE DSNLKSMDYN GILEDHSQHA LTNLEGVHPE  300
GNTADGLWEQ WVAFRSCRLK LQRLQVNARI LRLENRWFKW QRICWRKDRE LIRMRLENER  360
LKIENERIAL ELKYKEMRAD YDLTV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006495058.1	0.0	uncharacterized protein LOC102628040
TrEMBL	A0A067DWB0	0.0	A0A067DWB0_CITSI; Uncharacterized protein
STRING	XP_006495058.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	9e-79

Link Out ? help Back to Top
Phytozome	orange1.1g039131m
Entrez Gene	102628040