PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g039289m

Common Name

CISIN_1g039289mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 243aa MW: 28062.8 Da PI: 8.9161

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g039289m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.1	6.2e-23	41	128	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAke GFs+r+++sk k+++ i+++++vC keg+++++k +++r+r r gC akl+v k++ gk++v +++eHnH+l+ orange1.1g039289m 41 EFYNKYAKEGGFSIRINSSKICKESNDIIRKEYVCFKEGQARQSKVV--NRKRRRGIIRGGCSAKLVVVKSEFGKYMVRIFVEEHNHALS 128 6*************************************9998766..899999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.1E-21	41	128	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MNAQNVVGQS NCEDSLYVPE VALDRKPHKG QEFDTLDDAY EFYNKYAKEG GFSIRINSSK 60 ICKESNDIIR KEYVCFKEGQ ARQSKVVNRK RRRGIIRGGC SAKLVVVKSE FGKYMVRIFV 120 EEHNHALSSP RRVHLLRSHR SMSVVQKNLS QQLAVVSIPT CQQIGLFELQ AGGLQNMGCV 180 QRDFYNNDRN LWNELKGHDA DMLYEHFQSE KEKNSSFFYS IKAGCDDRIT HCFWADVVCR 240 RAY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	92	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY336943	0.0	AY336943.1 Poncirus trifoliata NBS-LRR-type disease resistance protein-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024043082.1	1e-177	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067DKT6	0.0	A0A067DKT6_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006442061.1	1e-110	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24003	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-27	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g039289m