PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039323m
Common NameCISIN_1g039323mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 383aa    MW: 42555.6 Da    PI: 9.5187
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039323mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP149.72e-46351882134
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 
                        +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd LGfdk+sktieWLl ++k+aikelt++  s +++c+++++s s+ ++s+      
  orange1.1g039323m  35 TGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDTLGFDKASKTIEWLLSKSKAAIKELTESLPSVKNSCTSGAKSLSSTSESEVvsgik 126
                        79**************************************************************5555566733333333322222234566 PP

                TCP  89 ...............kaaksaakskksqksaasa.lnlakesrakarararertrekmrikn 134
                                       ++  +   +  ++ks +++ + + +esr karararert ekm+++ 
  orange1.1g039323m 127 rikdtgdqksalvvdDSLVTLSRGAMNNKSRKAViNPIVRESRDKARARARERTLEKMKMRG 188
                        6667777888899985555544444444444444055566*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-4535186IPR005333Transcription factor, TCP
PROSITE profilePS5136936.8193795IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.029166183IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MASPVEATKK TTTKKKKNGG VNGDEKAQAV QRKRTGKKDR HSKIYTAQGP RDRRMRLSLQ  60
IARKFFDLQD TLGFDKASKT IEWLLSKSKA AIKELTESLP SVKNSCTSGA KSLSSTSESE  120
VVSGIKRIKD TGDQKSALVV DDSLVTLSRG AMNNKSRKAV INPIVRESRD KARARARERT  180
LEKMKMRGLE KSRKCSEEAN PNDLEQLRPC SPSQEKNSSL KVVAEAEEEE DQMDSVRIIE  240
KFLGFPSSPR SSSIFDYTLH IGESTAASSQ QNNPPYSTDY NSYYVLTNMK GSTSNLHAKI  300
PGDIFNINPD TCQEEKSSLI YTSTANSNEQ NPSSDSRILS NSQEQNPTSI FMTTSNIDSQ  360
PQFLEDQFAC NPIVDNRYCS LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-124295154Putative transcription factor PCF6
5zkt_B2e-124295154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484572.10.0transcription factor TCP12
TrEMBLA0A067G3Q70.0A0A067G3Q7_CITSI; Uncharacterized protein
STRINGXP_006484572.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-36TCP domain protein 12