PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g039420m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 285aa MW: 32477.6 Da PI: 9.9593

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g039420m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.2	2.2e-25	155	204	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+ledl kyF+lpi +A+ L+v+lTvLK++CR++GI+RWPhRkiksl orange1.1g039420m 155 AKIDLEDLVKYFDLPILEASTRLNVGLTVLKKKCREFGIPRWPHRKIKSL 204 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.246	139	224	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-21	157	204	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
RGSYVEMQAT PILKLRGFQV SELFQGRAIG LWLCIFAFGA QSSLAFVDIP PKLLISRNPK 60 LKSIPKLAND LQMIFQLSCG TENQELLQST LKEMCEMSRS HCYRSRRTPQ VFHQDLNCVP 120 YSVSTCEYSG SQQIEQCGPG TMDKKKKRAT SEDVAKIDLE DLVKYFDLPI LEASTRLNVG 180 LTVLKKKCRE FGIPRWPHRK IKSLDGLIHE LQEVDHQQPG GEAVGTAVAK RRQMLEEEKE 240 TIGRRPFVEI QRETKKFRQD IFKRRHKAKA LKIQTSQSPS SQQL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX064678	0.0	KX064678.1 Citrus trifoliata clone 1 RWP-RK domain containing protein (RKD5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006425291.2	0.0	protein RKD5
Refseq	XP_006467075.1	0.0	protein RKD5 isoform X1
Swissprot	O81791	2e-71	RKD5_ARATH; Protein RKD5
TrEMBL	V4SN59	0.0	V4SN59_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006467075.1	0.0	(Citrus sinensis)
STRING	XP_006425291.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-74	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	orange1.1g039420m

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]