PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039596m
Common NameCISIN_1g039596mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 392aa    MW: 43991.9 Da    PI: 5.0655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039596mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43.1e-1258107153
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                        s+y+GV+++++ ++W A++       k+ k ++lg+f  +eeAa a++ a+ + 
  orange1.1g039596m  58 SDYRGVSRNPNFKKWQARLGKT----KQtKAIYLGTFENEEEAAVAYDIAAIRV 107
                        78****************5442....235*********************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-1558118IPR016177DNA-binding domain
PfamPF008478.1E-858107IPR001471AP2/ERF domain
CDDcd000181.81E-1758119No hitNo description
SMARTSM003808.0E-2059123IPR001471AP2/ERF domain
PROSITE profilePS5103216.30559117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1659119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDVHAKENYT HTHAYFRYFV NYDLNDSEKD LEEVIHMTKE EYLVPLRRKT IDCSKRASDY  60
RGVSRNPNFK KWQARLGKTK QTKAIYLGTF ENEEEAAVAY DIAAIRVKGV EAITNFDKSQ  120
YDVNGITASE KIPIGKGVSR FIKENSVNDV LIMKKRRTSR LPTLCLKRDS SHQVMINPQL  180
GSSSQSLASS EEQRNQVNQM TIDDFSHQHP NEFQTNNSSA DANLGSGLGF SSDDGVLEGL  240
IAMINDGENR QFTQQVLDDY PSSSLMKAYE NPNSLFVDGY QNPSNFPHQV HQNDSQTNNP  300
SFLTHQLGED GSGSASRISE GVSSDGIMEG CSTMMGNEDE DFAFDDFLDM QQMSTDGNFP  360
KIHLHKAKIL CFNLMASIWG EIQRVAMMEP A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421472.20.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A067EPY90.0A0A067EPY9_CITSI; Uncharacterized protein
STRINGXP_006421472.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3278422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.12e-35AP2 family protein