PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g039664m

Common Name

CISIN_1g039664mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Protein Properties

Length: 214aa MW: 24692.2 Da PI: 10.1018

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g039664m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.7	1e-18	130	213	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp++f++++ +k + ++++lede+gr++e +i +kk+ l++GW+ F+ ++L++gD +vF+l+++++f orange1.1g039664m 130 FIKSMVRSHVYSCFWLGLPNQFCKQNL-PK-TVTEMVLEDENGREFEAVYIGQKKG----LSGGWRAFALHHKLDDGDALVFELVEQKRF 213 89*******************9994.33.3459***********655555....9********************9987766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.9E-19	121	213	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-20	123	213	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.18E-23	128	214	No hit	No description
Pfam	PF02362	4.9E-17	130	213	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.266	130	214	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-15	130	214	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MAKTNTYEEA RKKRLEENSQ RLQELGIEKI SKTLSQLSKS VKKSPQAQRH LPKFKSESVI 60 SIVEPRRSSR ARNSVVSYRD DLDIDLHPLR KSYLARPLEE VKMASYEERA RALKSAEQLQ 120 SSLQSGYPSF IKSMVRSHVY SCFWLGLPNQ FCKQNLPKTV TEMVLEDENG REFEAVYIGQ 180 KKGLSGGWRA FALHHKLDDG DALVFELVEQ KRFK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432042.2	1e-131	putative B3 domain-containing protein At5g58280
Refseq	XP_015384133.1	1e-131	putative B3 domain-containing protein At5g58280 isoform X1
Refseq	XP_024950699.1	1e-131	putative B3 domain-containing protein At5g58280 isoform X1
Swissprot	Q5KQI4	1e-63	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
Swissprot	Q9FHB2	1e-63	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A067EVH8	1e-156	A0A067EVH8_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006464978.1	1e-145	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16141	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-57	B3 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g039664m

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]