PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039936m
Common NameCISIN_1g039936mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 509aa    MW: 57162.4 Da    PI: 8.3399
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039936mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-15166260198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g sW+v+    +k   ++++ +GW  Fv++n++k gD+++F+l+++ e  
  orange1.1g039936m 166 FVRKMKRFNVSGSYTLNIPYQFSMAHL--PNCKTEVVLHNLKGASWTVNSVPtTKVHTSHTFCGGWLAFVRSNEIKLGDICIFELVHKCE-- 253
                        667777788899999*******98996..45899***************95557777779999*********************998444.. PP

                        .EEEEE- CS
                 B3  92 lvvkvfr 98 
                        l+v ++r
  orange1.1g039936m 254 LHVYILR 260
                        5999987 PP
2B349.95.7e-164004801396
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        s  l +p kfa +h   + ++++++l++++g+ W+v+   + k+++ +++ +GW  Fv+ n++k gD+++F+l++  + e++v++
  orange1.1g039936m 400 SYTLKIPYKFAMAHL--PDCKTEIVLRNLKGECWTVNSLPDSKGRMvHTFCGGWMAFVRGNDIKIGDVCIFELIS--KLEMRVHI 480
                        55699******9996..348899***************7766666679999*********************986..66667766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-12162IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.689160IPR003340B3 DNA binding domain
CDDcd100172.19E-8158No hitNo description
Gene3DG3DSA:2.40.330.105.4E-12362IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-21161260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-22163261IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-19164260No hitNo description
PROSITE profilePS5086312.802166262IPR003340B3 DNA binding domain
PfamPF023622.3E-12166260IPR003340B3 DNA binding domain
SMARTSM010191.0E-12166262IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-22380481IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-24381482IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-21386480No hitNo description
PROSITE profilePS5086312.689388484IPR003340B3 DNA binding domain
SMARTSM010191.5E-12388484IPR003340B3 DNA binding domain
PfamPF023627.2E-13397480IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
TLIGPSWDTW HIDLIQQDDN LFFDKGWPVF LRDNFIECGD LLVFRYDGEL HFTVQIFDQS  60
GCEKEAAFNS KSTSTGQKRE REEAVAHSDK ALQSLLKKIR ECSSSFESDC IDDNRDREAD  120
SCEETRRCLS LSTIFASPSQ PKTCNIKPED EEKKVAQSFI SAFPYFVRKM KRFNVSGSYT  180
LNIPYQFSMA HLPNCKTEVV LHNLKGASWT VNSVPTTKVH TSHTFCGGWL AFVRSNEIKL  240
GDICIFELVH KCELHVYILR VGKQYPDSQR GTTVLTGSNV SSTTISCKQF DGVPKKVKKN  300
SLKKIQLCNV KGSKSCEIKK HIGTDRNSVS IATCCLPKIS HEKSEAAAQN RNNVEAKMDS  360
TPGGNLRTMM ALDEEKAARS FNSCVPHFVR IMRKFNISGS YTLKIPYKFA MAHLPDCKTE  420
IVLRNLKGEC WTVNSLPDSK GRMVHTFCGG WMAFVRGNDI KIGDVCIFEL ISKLEMRVHI  480
TGVGRKEVDL ESGKLTSNES SAVDHPPF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473400.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X2
TrEMBLA0A067H9R90.0A0A067H9R9_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006473396.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16907911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-16B3 family protein