PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g040188m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ERF

Protein Properties

Length: 117aa MW: 12430 Da PI: 11.8839

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g040188m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.6	6.3e-13	26	74	4	55
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +GVr+ + +g+++AeIrdp + k +r +l++f tae+Aa a ++a+ k++g orange1.1g040188m 26 RGVRQTP-SGKFAAEIRDPAK--KGARCWLETFATAEQAALANVRAAFKFRG 74 9****.7*****954..34**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	18.769	24	82	IPR001471	AP2/ERF domain
SMART	SM00380	3.2E-23	24	88	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-17	25	82	IPR016177	DNA-binding domain
PRINTS	PR00367	8.2E-5	25	36	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-8	25	74	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.1E-23	26	83	IPR001471	AP2/ERF domain
CDD	cd00018	9.78E-21	26	83	No hit	No description
PRINTS	PR00367	8.2E-5	48	64	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
APTQANFPVA DAAALAVVPS KGNHSRGVRQ TPSGKFAAEI RDPAKKGARC WLETFATAEQ 60 AALANVRAAF KFRGRRALLN FPNFGAPERV RIKSKRSLQE PSSSTDGAGR GPQRGGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-26	20	82	1	63	ATERF1
3gcc_A	3e-26	20	82	1	63	ATERF1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269\|PubMed:7756828}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031947.1	3e-35	PREDICTED: ethylene-responsive transcription factor 2
Swissprot	Q40479	7e-30	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	V4TWU2	1e-77	V4TWU2_9ROSI; Uncharacterized protein
STRING	XP_006442940.1	2e-78	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33145	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47220.1	8e-29	ethylene responsive element binding factor 2

Link Out ? help Back to Top
Phytozome	orange1.1g040188m

Publications ? help Back to Top
Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]