PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040287m
Common NameCISIN_1g040287mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 163aa    MW: 17464.9 Da    PI: 8.6041
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040287mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00132951123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C++ F++   L  H  +H
  orange1.1g040287m 29 FECKTCNRQFPSFQALGGHRASH 51
                       89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-82798No hitNo description
PfamPF139122.5E-132853IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8272956IPR007087Zinc finger, C2H2
SMARTSM003550.162951IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
PfamPF139123.6E-1075100IPR007087Zinc finger, C2H2
PROSITE profilePS501579.41176109IPR007087Zinc finger, C2H2
SMARTSM003550.587698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MANCLMFMSQ GGHFDAVNSV DMTAAGRVFE CKTCNRQFPS FQALGGHRAS HKKPRLTDGT  60
GGGADTQQSP AKPRTHECSV CGLEFAIGQA LGGHMRRHRA VALHGNEKVS TLTLSDTAPL  120
VKKANSRRVL CLDLNLTPYE NDLECHRLGS NKAAAPIVDC FL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436055.21e-114zinc finger protein ZAT1
RefseqXP_006486058.21e-114zinc finger protein ZAT9-like
TrEMBLA0A067FK641e-117A0A067FK64_CITSI; Uncharacterized protein
STRINGXP_006486058.11e-116(Citrus sinensis)
STRINGXP_006436055.11e-116(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-36C2H2 family protein