PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g040419m

Common Name

CISIN_1g040419mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 198aa MW: 23334.5 Da PI: 9.3292

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g040419m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116	3.7e-36	5	132	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +GfrF Ptdee++ + Lkkk + + + ++ike+d y++ePw+Lp +++++ee+ wyfF++ d kya+++r nr t++g+Wk+tg+ ++ orange1.1g040419m 5 VGFRFYPTDEEII-RLLKKKRLDPAFFV-HTIKEIDFYSFEPWELPchSEIQSEEEVWYFFCEPDYKYAKSRRVNRGTNEGTWKKTGNGSKI 94 7**********.88999999988877.78***********6448888999********************************** PP NAM 93 lsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 ++k ++e++g+k++L f + +a+k kt+Wvmhe ++ orange1.1g040419m 95 KRKySTEVIGTKRILSFScHDSASKKAKTEWVMHEIAV 132 9988899******9666899999******875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.068	3	150	IPR003441	NAC domain
SuperFamily	SSF101941	7.32E-40	4	150	IPR003441	NAC domain
Pfam	PF02365	8.2E-19	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MNSLVGFRFY PTDEEIIRLL KKKRLDPAFF VHTIKEIDFY SFEPWELPCH SEIQSEEEVW 60 YFFCEPDYKY AKSRRVNRGT NEGTWKKTGN GSKIKRKYST EVIGTKRILS FSCHDSASKK 120 AKTEWVMHEI AVEDDPDYKK DFVVCRLERK REKKMLGVVS TKRKRDEKLG VSTNDGDQSC 180 QNLTSKRSQI AEDTTRNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-22	6	151	20	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-22	6	151	20	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-22	6	151	20	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-22	6	151	20	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-22	6	151	23	169	NAC domain-containing protein 19
3swm_B	1e-22	6	151	23	169	NAC domain-containing protein 19
3swm_C	1e-22	6	151	23	169	NAC domain-containing protein 19
3swm_D	1e-22	6	151	23	169	NAC domain-containing protein 19
3swp_A	1e-22	6	151	23	169	NAC domain-containing protein 19
3swp_B	1e-22	6	151	23	169	NAC domain-containing protein 19
3swp_C	1e-22	6	151	23	169	NAC domain-containing protein 19
3swp_D	1e-22	6	151	23	169	NAC domain-containing protein 19
4dul_A	1e-22	6	151	20	166	NAC domain-containing protein 19
4dul_B	1e-22	6	151	20	166	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	164	RKREKKMLGVVSTKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006485394.1	1e-145	NAC domain-containing protein 105-like
Refseq	XP_024042303.1	1e-145	NAC domain-containing protein 105-like
TrEMBL	A0A067D680	1e-145	A0A067D680_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A1S8AC32	1e-143	A0A1S8AC32_CITLI; NAC domain containing protein
TrEMBL	A0A2H5PC91	1e-142	A0A2H5PC91_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006485394.1	1e-144	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13336	4	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46590.1	1e-30	NAC domain containing protein 96

Link Out ? help Back to Top
Phytozome	orange1.1g040419m