PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g040653m

Common Name

CISIN_1g040653mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 229aa MW: 26125.5 Da PI: 8.4601

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g040653m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.9e-09	19	55	1	39
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 rg+ + +Edel++++ ++l ++ W++Ia +++ gRt+++ orange1.1g040653m 19 RGNISHDEDELIIRLLNLLANR-WSLIAGRLP-GRTDNE 55 78999***************.*****.**96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-10	1	25	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.88E-13	2	55	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.225	14	62	IPR017930	Myb domain
SMART	SM00717	0.0015	18	60	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-7	19	55	IPR001005	SANT/Myb domain
CDD	cd00167	1.77E-5	23	55	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-11	26	55	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
CGKSCRLRWL NYLRPDIKRG NISHDEDELI IRLLNLLANR WSLIAGRLPG RTDNENMKSR 60 IIGAPTLENK KLQDHHQSPS SSTACTRKTL NQCQEKPKLG SKKFIAKTDS YPIRTRASKR 120 TKALFFSTPE QEKSYGQDQL PNLDDTDSIG GDIVSAINTC DKDKGYYSSQ NSDGKVKDSE 180 FASVDELIRS EFEWFRALFL YTYIWVLHMN YINNDGSICV YCEDRLAI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024036075.1	1e-93	transcription factor TT2
TrEMBL	A0A067FNL6	1e-169	A0A067FNL6_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006426646.1	4e-94	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33293	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	5e-19	MYB family protein

Link Out ? help Back to Top
Phytozome	orange1.1g040653m