PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g040747m

Common Name

CISIN_1g040747mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 157aa MW: 18076.4 Da PI: 5.0355

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g040747m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.8	6.5e-34	12	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dke 91 lpp+frF+Ptdeel+v +L++kv+g++l++ ++i+e+d yk+ePw+Lp+k+ ++ ew+fFs+ d+k+++ +++nr+t gyW+ g+ + + orange1.1g040747m 12 LPPCFRFSPTDEELLVLFLRRKVAGRRLSI-NFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSgTDK 102 79**************************.99***********87778999************************99884444 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + g k g+ap+g kt+W+mheyrl orange1.1g040747m 103 IIT----TAGRK-----LAGNAPNGIKTEWIMHEYRL 130 444....34555.....2599************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-46	8	151	IPR003441	NAC domain
PROSITE profile	PS51005	37.223	12	153	IPR003441	NAC domain
Pfam	PF02365	8.5E-18	13	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
NGDVFDHDLI SLPPCFRFSP TDEELLVLFL RRKVAGRRLS INFITEIDFY KFEPWELPSK 60 ALFGDYEWFF FSPMDRKNPE ASEPNRVTGV GYWEDAGSGT DKIITTAGRK LAGNAPNGIK 120 TEWIMHEYRL IEPHPNNDSS KLDDWILCRI SQCRGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-61	10	157	15	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-61	10	157	15	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-61	10	157	15	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-61	10	157	15	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-61	10	157	18	172	NAC domain-containing protein 19
3swm_B	2e-61	10	157	18	172	NAC domain-containing protein 19
3swm_C	2e-61	10	157	18	172	NAC domain-containing protein 19
3swm_D	2e-61	10	157	18	172	NAC domain-containing protein 19
3swp_A	2e-61	10	157	18	172	NAC domain-containing protein 19
3swp_B	2e-61	10	157	18	172	NAC domain-containing protein 19
3swp_C	2e-61	10	157	18	172	NAC domain-containing protein 19
3swp_D	2e-61	10	157	18	172	NAC domain-containing protein 19
4dul_A	1e-61	10	157	15	169	NAC domain-containing protein 19
4dul_B	1e-61	10	157	15	169	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269\|PubMed:15319476}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269\|PubMed:15319476}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024953916.1	1e-104	LOW QUALITY PROTEIN: NAC domain-containing protein 13-like
Swissprot	Q9LDY8	8e-61	NAC55_ARATH; NAC domain-containing protein 55
TrEMBL	A0A067EIN5	1e-113	A0A067EIN5_CITSI; Uncharacterized protein (Fragment)
STRING	EMJ12761	1e-60	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13336	4	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	3e-63	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	orange1.1g040747m

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zheng XY, et al. Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation. Cell Host Microbe, 2012. 11(6): p. 587-96 [PMID:22704619] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Gimenez-Ibanez S, et al. JAZ2 controls stomata dynamics during bacterial invasion. New Phytol., 2017. 213(3): p. 1378-1392 [PMID:28005270] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376] Fu Y,Ma H,Chen S,Gu T,Gong J Control of proline accumulation under drought via a novel pathway comprising the histone methylase CAU1 and the transcription factor ANAC055. J. Exp. Bot., 2018. 69(3): p. 579-588 [PMID:29253181]