PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g040760m

Common Name

CISIN_1g040760mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 109aa MW: 11787.8 Da PI: 6.8092

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g040760m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	75	97	3	25
HHHHHHHHHHHHHHHHHHHHHHC CS HLH 3 rahnerErrRRdriNsafeeLre 25 +h+ +Er RR++i +++ L+ orange1.1g040760m 75 NSHSLVERVRREKISERMKFLQN 97 58**************9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.67E-5	69	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-5	72	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
KSLVNSHGEA KQAFGESSSD SNEVEFSGGG GQDEPSTLEG TGGNLLLRGK QGSQTSDQPK 60 EEYIHVRARR GQATNSHSLV ERVRREKISE RMKFLQNLSL AIEETGRS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146811	1e-52	EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006484281.1	6e-36	transcription factor bHLH49 isoform X2
Refseq	XP_024956728.1	8e-36	transcription factor bHLH49 isoform X1
TrEMBL	A0A2H5P8A5	4e-71	A0A2H5P8A5_CITUN; Uncharacterized protein
STRING	XP_006484279.1	3e-35	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5947	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	1e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g040760m