PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040872m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 205aa    MW: 23272.4 Da    PI: 7.1361
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040872mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.6e-1834118290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +++eY+k+ GF v +++s+k   +g   + tf C ++g++++++ +     +++++ +t C+a+l   + +dgkw + +l+leHnH l 
  orange1.1g040872m  34 YFKEYGKRKGFPVLRRTSRKD-SDGILRNVTFACGRSGETRSKSVN---ILKPQPNAKTCCNARLGAGLGDDGKWTIRSLNLEHNHVLL 118
                        79**************99998.8999*************9998777...999**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1434118IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEKDIEVEEL EKIEEDDEPI IGMSFDSDVD LFIYFKEYGK RKGFPVLRRT SRKDSDGILR  60
NVTFACGRSG ETRSKSVNIL KPQPNAKTCC NARLGAGLGD DGKWTIRSLN LEHNHVLLTP  120
TKSKYFRCNR SVNSYAKKKL DAFQNLEGSC VDMNMYPHGV LDYCNGLMSL HHMVGDNVYP  180
TPTQNSCMEP QFQPHGHFQQ LLFQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.12287e-80fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034829.11e-97protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067DYK53e-99A0A067DYK5_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006477544.18e-86(Citrus sinensis)
STRINGXP_006484349.11e-80(Citrus sinensis)
STRINGXP_006487498.13e-84(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17343310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.21e-13FAR1-related sequence 4