PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040988m
Common NameCISIN_1g040988mg, LOC107175949
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 117aa    MW: 13069 Da    PI: 9.5307
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040988mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52.1e-12789484
                       E-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3  4 vltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84
                       +lt  dv+++  l +  + ++e+      g+   s++l++ede+g++W++ l +  +  g+ ++++GW++Fv + + k+gD vvF+ 
  orange1.1g040988m  7 ILTETDVSTR--LAVESNTIDEFfpafeAGQ--DSQELVVEDENGERWRFGLFIlLGPYGKPTISAGWRRFVMSRQAKVGDQVVFSK 89
                       5555555544..5555566656666655444..5779***************66677777899**********************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.0522109IPR003340B3 DNA binding domain
SuperFamilySSF1019364.19E-12390IPR015300DNA-binding pseudobarrel domain
CDDcd100179.49E-134107No hitNo description
Gene3DG3DSA:2.40.330.107.1E-16491IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-92689IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MEVYKKILTE TDVSTRLAVE SNTIDEFFPA FEAGQDSQEL VVEDENGERW RFGLFILLGP  60
YGKPTISAGW RRFVMSRQAK VGDQVVFSKE RVAASGSASS YKIRVVKQVK LFKSAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067ESG32e-78A0A067ESG3_CITSI; Uncharacterized protein
STRINGXP_006431363.16e-54(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2053722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.11e-08auxin response factor 9