PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041038m
Common NameCISIN_1g041038mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 267aa    MW: 28880.3 Da    PI: 8.4133
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041038mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.24.4e-1886202187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............................rergferspkqCkekwenlnkry 61 
                        +W++  + +L+ea++e+ ++l+rg+l++ +Weev++++                               +  +  +s +qCk+k++nl+kry
  orange1.1g041038m  86 EWSDTAIACLLEAYTEKLNQLNRGNLRGRDWEEVAEVVsercgggggnnnnnendnninnnnnssgekrEVVKAAKSVEQCKNKIDNLKKRY 177
                        5*****************************************************************9755567789**************** PP

           trihelix  62 kkikegekkrtsessstcpyfdqlea 87 
                        k + +++++  s  +s++ +f+q+ea
  orange1.1g041038m 178 KVEVQRMGSSGS-GTSNWLWFKQIEA 202
                        ********9755.556*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-1684203No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSSQDYPLIP ESHAPTRIPQ TTDSTAAANY YAHSAFTTNE DSDADKSGSG SGSGSGPKRN  60
PYYYKKQKTG ETATDYRVDY RKDREEWSDT AIACLLEAYT EKLNQLNRGN LRGRDWEEVA  120
EVVSERCGGG GGNNNNNEND NNINNNNNSS GEKREVVKAA KSVEQCKNKI DNLKKRYKVE  180
VQRMGSSGSG TSNWLWFKQI EAIMGTINNN HNNAISSSNY GLVNKSTGGG GSTEIVERNG  240
GAAATAMASA SPSPVAVSPF SRQARR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436611.10.0uncharacterized protein LOC18045004
TrEMBLA0A067EJI50.0A0A067EJI5_CITSI; Uncharacterized protein
TrEMBLA0A2H5QK480.0A0A2H5QK48_CITUN; Uncharacterized protein (Fragment)
TrEMBLV4TJA00.0V4TJA0_9ROSI; Uncharacterized protein
STRINGXP_006436611.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2300244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.27e-42Trihelix family protein