PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041048m
Common NameCISIN_1g041048mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 336aa    MW: 38808.6 Da    PI: 8.5213
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041048mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-131298698
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       + ++ l+ + l++p kf++++g +   s   +++ +sgr W v+l  +k+ ++ ++  GW eF +   + +g f++Fk++g+s+f  +v +f+
  orange1.1g041048m 12 IVPSILQDKKLRIPDKFVQKFGDE--LSSIAKFTIPSGRMWFVEL--KKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNF--NVYIFD 98
                       4455566677********999855..7779***************..9***9*****************************9999..998886 PP
2B362.47.6e-20233326198
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f  +l ps+v ++ +l +p +fa+++ +g+k     +t+ d++g++W v++i+++++ +  ++kGW eFv +n+L+e D++vF+l+++++ +
  orange1.1g041048m 233 FRVILRPSYVYRTLLLHVPTSFARKYlNGIKG---YITIIDSNGKQWPVRCIFKNGGAK--FSKGWPEFVWENNLDESDVCVFELIKSNDVT 319
                        667899********************866643...59999***********99888866..89***********************999999 PP

                        .EEEEE- CS
                 B3  92 lvvkvfr 98 
                        l+ ++fr
  orange1.1g041048m 320 LKATIFR 326
                        9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-19698IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-20698IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-12798No hitNo description
PROSITE profilePS5086312.1397100IPR003340B3 DNA binding domain
SMARTSM010193.1E-88100IPR003340B3 DNA binding domain
PfamPF023622.1E-101398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-24225326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-24226326IPR015300DNA-binding pseudobarrel domain
CDDcd100175.17E-20231326No hitNo description
SMARTSM010192.3E-15233328IPR003340B3 DNA binding domain
PROSITE profilePS5086314.367233328IPR003340B3 DNA binding domain
PfamPF023621.7E-18233326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
EGKRSCIFYK LIVPSILQDK KLRIPDKFVQ KFGDELSSIA KFTIPSGRMW FVELKKCNKQ  60
LWFDIGWHEF IEHCSIHSGY FLIFKYQGNS NFNVYIFDLA ISEIEYPSLE EPSDSKQCHV  120
PIEKDKEKNS SLRILPPLRA PCPDPFSPAT KVLDEGVCYK CNKDSTSGVK IEYLHIPKDE  180
HNQETAFHCP QDKGIQFKNT SDEVGLRWRA VTTEEKKRTV HAAEMYKSSN PLFRVILRPS  240
YVYRTLLLHV PTSFARKYLN GIKGYITIID SNGKQWPVRC IFKNGGAKFS KGWPEFVWEN  300
NLDESDVCVF ELIKSNDVTL KATIFRVLED ARPVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-4420232918144B3 domain-containing transcription factor VRN1
4i1k_B4e-4420232918144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479393.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_024035723.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A067EAX00.0A0A067EAX0_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006479393.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-86B3 family protein