PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g041099m

Common Name

CISIN_1g041099mg, LOC102618862

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 362aa MW: 39564.9 Da PI: 8.1485

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g041099m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	5.9e-39	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ orange1.1g041099m 49 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 109 56789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-33	52	107	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-27	53	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MLSNCEKMVV ISSTTNEWPQ NHQIDEKNLM ASTGRVMDKA GQEPPQQQQQ PPLKCPRCDS 60 SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVKR PASANNSIDG 120 SNPSAAANPN NPHSQRQIDI SSTSNHINPL FFGLSTNPSD MNLPFSTFNS RVVSSLDTIS 180 GYDLQPQLNA LGLGFSSGLI MSNTDVGDCN YRNGFNPNKQ IQEVVTSSNS LLSSYPTFGS 240 SSSSPTIASL LASSLHQPKF MNGVVKSSTE APNHFNNNLA SFEDLQMTAN NNNNNGEAAR 300 TGMMKEVKAE EGQRRMDWNV ECQNQMEQIG LADPSLYWNS TSSVGAWHDP SNIGSSVTSL 360 I*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MLSNCEKMVV ISSTTNEWPQ NHQIDEKNLM ASTGRVMDKA GQEPPQQQQQ PPLKCPRCDS  60
SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVKR PASANNSIDG  120
SNPSAAANPN NPHSQRQIDI SSTSNHINPL FFGLSTNPSD MNLPFSTFNS RVVSSLDTIS  180
GYDLQPQLNA LGLGFSSGLI MSNTDVGDCN YRNGFNPNKQ IQEVVTSSNS LLSSYPTFGS  240
SSSSPTIASL LASSLHQPKF MNGVVKSSTE APNHFNNNLA SFEDLQMTAN NNNNNGEAAR  300
TGMMKEVKAE EGQRRMDWNV ECQNQMEQIG LADPSLYWNS TSSVGAWHDP SNIGSSVTSL  360
I*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.2694	0.0	vegetative meristem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467767.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	A0A067GDE2	0.0	A0A067GDE2_CITSI; Uncharacterized protein
STRING	XP_006467767.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	1e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	orange1.1g041099m
Entrez Gene	102618862