PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041368m
Common NameCISIN_1g041368mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 103aa    MW: 10975.8 Da    PI: 9.4253
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041368mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.97.9e-391199188
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                       +C aCk+lrrkC+k+Cv+apyf a+q + +fa+vhk+FGasn +kll+++p+++r da+ sl+yeA ar+rdP+yG+vg+i +lqqq++
  orange1.1g041368m 11 PCGACKFLRRKCVKGCVFAPYFDADQgTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQVS 99
                       7*************************88***********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.50810102IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-381199IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MMMSANNGGG PCGACKFLRR KCVKGCVFAP YFDADQGTTH FAAVHKVFGA SNASKLLSRI  60
PPHKRLDAVV SLCYEAMART RDPIYGCVGH IVALQQQVSI TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-39898897LOB family transfactor Ramosa2.1
5ly0_B3e-39898897LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445238.21e-69LOB domain-containing protein 19 isoform X1
RefseqXP_006490937.11e-69LOB domain-containing protein 19
SwissprotO813222e-48LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A067HDF13e-70A0A067HDF1_CITSI; Uncharacterized protein
STRINGXP_006490937.15e-69(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.18e-51LOB domain-containing protein 31