PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041468m
Common NameCISIN_1g041468mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 125aa    MW: 14184.1 Da    PI: 7.597
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041468mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.52.4e-172686259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                       dDgy+WrKYGqKe+ gs+fpr     t+    +    kk+++ ++dp  +eitY+geH+++
  orange1.1g041468m 26 DDGYTWRKYGQKEILGSKFPRIARGATTDirmDALQGKKLQQLSDDPVSFEITYHGEHTCQ 86
                       8********************9999998888899999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-161186IPR003657WRKY domain
PROSITE profilePS5081113.2872088IPR003657WRKY domain
SuperFamilySSF1182903.14E-142286IPR003657WRKY domain
SMARTSM007744.4E-132587IPR003657WRKY domain
PfamPF031061.6E-132686IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MALHPYSIVQ KSQRTVRVDA PQIPEDDGYT WRKYGQKEIL GSKFPRIARG ATTDIRMDAL  60
QGKKLQQLSD DPVSFEITYH GEHTCQLSLE NPPVPSSLPE LEIAQGDWQP KKRESALKYL  120
KIYD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010147.11e-22PREDICTED: WRKY transcription factor 55-like
TrEMBLA0A067F9N15e-87A0A067F9N1_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-20WRKY DNA-binding protein 55