PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041475m
Common NameCISIN_1g041475mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 154aa    MW: 17907.5 Da    PI: 8.6305
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041475mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-0958105146
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                        r  WT+   +l+ +a + + ++   +W+  ar +g g+t +++k ++ +
  orange1.1g041475m  58 RSTWTAKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTVEEVKRHYEM 105
                        789********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.60356111IPR017884SANT domain
SMARTSM007175.8E-857109IPR001005SANT/Myb domain
PfamPF002496.3E-658106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-459113IPR009057Homeodomain-like
CDDcd001679.83E-760106No hitNo description
SuperFamilySSF466897.33E-1261114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MYGEQSHMRI AILMYLPNIT KRHTFCSYKF SELPFLLYIS LFEFIYCTLF SFRNGIGRST  60
WTAKQNKLFE NALAIYDKDT PDRWHNLARA VGGKTVEEVK RHYEMLAEDV SRIEAGEIPL  120
PDYKKIGGTN KAHSYINMDN EEQRLKTLRL SEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-3255150692RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473504.13e-66protein RADIALIS-like 3 isoform X1
SwissprotQ1A1738e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A067H0Y31e-112A0A067H0Y3_CITSI; Uncharacterized protein
STRINGXP_006473504.11e-65(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-35RAD-like 6