PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041516m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 118aa    MW: 13514.4 Da    PI: 10.7912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041516mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-183483255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  orange1.1g041516m 34 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYDTAVFYLRG 83
                       6******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.8783491IPR001471AP2/ERF domain
SMARTSM003803.8E-353497IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-213492IPR016177DNA-binding domain
PRINTSPR003671.6E-113546IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-303592IPR001471AP2/ERF domain
PfamPF008472.1E-113583IPR001471AP2/ERF domain
CDDcd000187.98E-263593No hitNo description
PRINTSPR003671.6E-117393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEGGGCCSTS TSTKSPEKRK PRQQRQHQQQ QEKPYKGIRM RKWGKWVAEI REPNKRSRIW  60
LGSYTTPIAA ARAYDTAVFY LRGPSARLNF PELIFQEDDL RDVSAASIRK KATEVGAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153391463ATERF1
3gcc_A2e-153391463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.41350.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473291.11e-84ethylene-responsive transcription factor RAP2-1-like
SwissprotQ9FH941e-46ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A2H5NI252e-83A0A2H5NI25_CITUN; Uncharacterized protein
STRINGXP_006473291.14e-84(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-45DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]