PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g041600m

Common Name

CISIN_1g041600mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 161aa MW: 18578.5 Da PI: 8.8146

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g041600m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.4	7.6e-25	68	118	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l dl yF+lpi++AA+ +++c+Tv+K+iCR+ G++RWPhRkiks+ orange1.1g041600m 68 TGKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSI 118 5689*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.915	58	138	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-21	70	118	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
FCKKSIENVK EYLVQYCEER KQAGFMMLPD PLSDFYEAVC VGLVLDDNLT TDDYSQPPMT 60 NSVQRERTGK LTLRDLMIYF HLPIEEAARR MKLCPTVVKK ICRRDGLHRW PHRKIKSIQR 120 RMSVASGRLR SNDAEERANA QIEIQRLQEE MAAACAGLTR *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX064680	1e-159	KX064680.1 Citrus trifoliata clone 3 RWP-RK domain containing protein (RKD5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006474671.1	1e-109	uncharacterized protein LOC102621663
TrEMBL	A0A067G1W6	1e-116	A0A067G1W6_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006474671.1	1e-108	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	9e-12	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	orange1.1g041600m